Hello,
I’ve been running a Q-Chem job with user-defined EFP fragments and encountered the following error: malloc(): unsorted double linked list corrupted
. The output doesn’t show any errors. I’m unsure if this issue is related to my fragment files or how I’m handling them. When I use the same input with the fragment library file for water, everything works as expected.
Has anyone else experienced this issue or have any suggestions on what might be causing it? Any help would be greatly appreciated.
Thanks!
$molecule
-2 1
C 32.327000 30.492001 29.794001
O 32.702999 30.445000 28.631001
C 31.875000 31.677999 30.542000
C 30.976000 30.884001 31.261999
O 29.988001 31.222000 31.830000
C 31.238001 29.674999 30.403000
C 31.573000 25.892000 26.868000
H 31.724001 25.202000 26.044001
C 32.674999 26.535000 27.497999
H 33.729000 26.455999 27.249001
C 32.334999 27.349001 28.613001
H 33.162998 27.826000 29.135000
N 31.070000 27.684999 29.011000
C 30.014999 27.093000 28.329000
C 30.261999 26.148001 27.302999
H 29.471001 25.551001 26.858000
C 30.541000 28.551001 29.907000
C 29.212999 28.441999 29.997999
C 28.766001 27.570000 29.032000
C 27.378000 27.194000 28.648001
H 26.747999 27.385000 29.524000
H 27.344999 26.125999 28.405001
H 27.098000 27.764999 27.754999
C 28.587000 28.375000 31.202000
C 31.625000 36.557999 32.445999
H 31.462999 37.535999 32.888000
C 31.430000 35.355999 33.102001
H 31.188999 35.390999 34.160000
C 31.575001 34.091999 32.411999
H 31.313999 33.167999 32.924999
N 31.615000 34.125000 31.072001
C 31.945000 35.317001 30.408001
C 31.898001 36.520000 31.051001
H 31.896999 37.415001 30.434999
C 31.802999 33.061001 30.233000
C 31.690001 33.618999 28.988001
C 31.743999 35.006001 29.097000
C 31.101999 35.853001 28.035000
H 31.475000 35.632000 27.028000
H 31.379999 36.887001 28.268999
H 30.028999 35.712002 28.208000
C 28.986000 27.521000 32.251999
H 29.889000 26.948000 32.062000
C 28.202999 27.417999 33.408001
H 28.496000 26.666000 34.133999
C 27.059000 28.188999 33.569000
C 26.677999 28.951000 32.500999
H 25.714001 29.445000 32.575001
C 27.398001 29.125000 31.362000
H 27.165001 29.871000 30.608000
O 26.350000 28.246000 34.743000
C 26.809999 27.393999 35.833000
H 26.841000 26.334999 35.550999
H 27.837000 27.712999 36.049000
C 25.764999 27.681000 36.952000
H 25.799999 26.952000 37.770000
H 24.775999 27.479000 36.523998
C 25.783001 29.200001 37.513000
H 26.024000 30.009001 36.813999
H 24.716000 29.445000 37.575001
C 26.506001 29.549000 38.896999
H 26.110001 28.815001 39.609001
H 26.365000 30.612000 39.127998
S 28.299000 29.263000 38.862000
O 28.687000 29.612000 40.216999
O 28.862000 30.122999 37.827000
O 28.415001 27.847000 38.500000
C 31.306999 32.866001 27.761999
C 31.899000 33.101002 26.527000
H 32.580002 33.936001 26.386000
C 31.559000 32.212002 25.441000
H 32.171001 32.358002 24.556000
C 30.816999 31.002001 25.631001
C 30.125000 30.863001 26.834999
H 29.326000 30.139999 26.966000
C 30.243000 31.840000 27.851999
H 29.622000 31.794001 28.742001
O 30.534000 30.084000 24.645000
C 31.099001 30.122999 23.319000
H 32.193001 30.208000 23.337000
H 30.757000 31.028999 22.802000
C 30.655001 28.906000 22.509001
H 29.586000 28.989000 22.282000
H 31.170000 28.806999 21.547001
C 30.593000 27.563000 23.349001
H 29.657000 27.534000 23.919001
H 31.500999 27.441000 23.952000
C 30.371000 26.421000 22.393000
H 29.302000 26.306999 22.173000
H 30.875000 26.716000 21.465000
S 30.889000 24.841000 22.861000
O 30.437000 24.100000 21.688999
O 32.313999 25.052999 22.974001
O 30.214001 24.555000 24.087000
$end
$rem
JOBTYPE SP
METHOD wB97X-D
BASIS def2-SVPD
CIS_N_ROOTS 7
CIS_SINGLETS true
CIS_TRIPLETS false
RPA true
EFP true
EFP_FRAGMENTS_ONLY false
EFP_COORD_XYZ true
SCF_ALGORITHM RCA_DIIS
THRESH 14
PURECART 1111
VARTHRESH 0
INCFOCK 0
MEM_TOTAL 16000 ! Specify memory in megabytes (16 GB)
$end
$efp_fragments
choline_u
A01C1 22.156000 30.417000 31.671000
A02H2 23.065001 30.709000 31.143000
A03H3 22.329000 30.379000 32.748001
octanoate_u
A01C1 23.230000 31.836000 38.396999
A02H2 23.862000 31.579000 39.255001
A03H3 22.796000 30.900999 38.023998
octanoate_u
A01C1 26.433001 34.216000 44.223999
A02H2 27.096001 33.445999 43.813999
A03H3 27.014000 35.092999 44.532001
octanoate_u
A01C1 31.037001 39.411999 39.873001
A02H2 31.622000 40.306000 40.119999
A03H3 31.782000 38.608002 39.886002
octanoate_u
A01C1 35.082001 31.579000 24.141001
A02H2 34.181000 31.091000 23.752001
A03H3 35.787998 31.013000 23.523001
octanoate_u
A01C1 37.349998 30.384001 20.291000
A02H2 37.019001 31.427999 20.330999
A03H3 37.535000 30.033001 21.312000
choline_u
A01C1 27.985001 32.818001 35.766998
A02H2 28.938999 33.348000 35.743999
A03H3 27.039000 33.351002 35.868000
choline_u
A01C1 33.973999 41.403999 27.903000
A02H2 34.080002 41.214001 26.834000
A03H3 32.993999 41.200001 28.337000
octanoate_u
A01C1 36.212002 31.044001 30.388000
A02H2 36.812000 31.209000 29.486000
A03H3 36.743000 31.179001 31.337000
octanoate_u
A01C1 37.375999 33.118999 34.810001
A02H2 37.174000 33.813000 35.633999
A03H3 37.665001 32.167999 35.271999
choline_u
A01C1 25.458000 22.483000 24.693001
A02H2 25.045000 23.336000 24.150999
A03H3 25.165001 21.610001 24.108000
choline_u
A01C1 20.750999 15.843000 35.611000
A02H2 21.420000 16.697001 35.724998
A03H3 20.530001 15.605000 34.569000
octanoate_u
A01C1 26.441000 27.900999 45.688000
A02H2 26.062000 28.441999 46.563999
A03H3 27.535000 27.974001 45.705002
choline_u
A01C1 33.998001 36.259998 34.945000
A02H2 34.185001 35.771000 35.902000
A03H3 33.000000 36.685001 34.827000
choline_u
A01C1 31.961000 30.077000 16.712999
A02H2 32.436001 29.171000 17.091999
A03H3 30.879000 30.059999 16.570999
choline_u
A01C1 33.139999 36.120998 22.900000
A02H2 33.679001 37.042999 22.674000
A03H3 33.644001 35.541000 23.674000
octanoate_u
A01C1 23.812000 25.427000 32.028000
A02H2 23.730000 25.712999 33.082001
A03H3 23.334000 24.445000 31.933001
octanoate_u
A01C1 32.872002 42.282001 34.841000
A02H2 31.981001 42.546001 35.422001
A03H3 32.766998 41.202000 34.685001
choline_u
A01C1 26.480000 39.012001 39.951000
A02H2 26.577000 38.173000 40.641998
A03H3 27.476000 39.451000 39.875999
choline_u
A01C1 38.063000 34.070000 26.320999
A02H2 37.368999 33.252998 26.115999
A03H3 38.966999 33.976002 25.719000
choline_u
A01C1 25.044001 36.417000 27.851000
A02H2 23.996000 36.672001 27.688000
A03H3 25.318001 37.147999 28.614000
octanoate_u
A01C1 25.506001 38.021000 31.495001
A02H2 25.809000 37.320000 30.709000
A03H3 24.812000 38.804001 31.167999
octanoate_u
A01C1 31.027000 19.851000 22.677000
A02H2 30.745001 19.055000 23.375000
A03H3 30.101999 20.343000 22.356001
octanoate_u
A01C1 22.172001 27.096001 38.048000
A02H2 22.938000 26.658001 37.397999
A03H3 22.681999 27.983999 38.437000
choline_u
A01C1 32.896999 29.368999 44.321999
A02H2 32.117001 29.363001 45.084999
A03H3 33.570000 30.198000 44.544998
octanoate_u
A01C1 23.027000 21.625999 30.333000
A02H2 22.586000 22.273001 31.100000
A03H3 24.121000 21.576000 30.318001
octanoate_u
A01C1 25.444000 23.229000 19.197001
A02H2 25.187000 22.750000 18.245001
A03H3 25.962999 24.160000 18.938999
octanoate_u
A01C1 22.312000 28.455999 26.723000
A02H2 21.434999 28.924000 27.184999
A03H3 22.736000 29.139999 25.979000
choline_u
A01C1 30.077000 26.106001 36.556000
A02H2 29.344999 26.691000 35.997002
A03H3 30.039000 25.063000 36.237000
octanoate_u
A01C1 23.014999 23.686001 35.764999
A02H2 23.125999 24.774000 35.838001
A03H3 23.325001 23.301001 34.786999
choline_u
A01C1 30.884001 32.574001 44.119999
A02H2 30.900000 31.973000 45.030998
A03H3 29.917999 32.532001 43.615002
choline_u
A01C1 31.733999 24.754999 30.677000
A02H2 32.573002 25.313999 30.260000
A03H3 30.840000 25.372000 30.566999
octanoate_u
A01C1 21.864000 31.652000 44.653999
A02H2 22.958000 31.704000 44.640999
A03H3 21.775000 30.766001 45.293999
choline_u
A01C1 35.313999 26.069000 22.952000
A02H2 35.507999 26.639000 23.862000
A03H3 35.641998 26.635000 22.079000
choline_u
A01C1 27.601000 29.577999 24.195999
A02H2 28.485001 29.822001 23.606001
A03H3 28.020000 29.243000 25.146000
octanoate_u
A01C1 25.313999 41.598999 34.408001
A02H2 25.888000 41.706001 33.480000
A03H3 24.993999 40.556000 34.507999
octanoate_u
A01C1 38.236000 24.739000 30.292000
A02H2 38.348999 24.617001 29.208000
A03H3 37.886002 23.761000 30.639999
choline_u
A01C1 31.611000 33.526001 40.620998
A02H2 32.259998 33.021999 41.338001
A03H3 31.931999 34.518002 40.299000
octanoate_u
A01C1 39.362999 29.687000 28.285000
A02H2 40.325001 29.344999 28.683001
A03H3 38.618000 29.587999 29.083000
choline_u
A01C1 28.629000 36.513000 18.041000
A02H2 29.694000 36.382000 18.239000
A03H3 28.308001 36.043999 17.110001
octanoate_u
A01C1 27.610001 28.565001 18.933001
A02H2 27.844000 29.427999 19.566000
A03H3 28.469999 27.886000 18.915001
octanoate_u
A01C1 30.148001 19.527000 32.355000
A02H2 29.169001 19.143999 32.665001
A03H3 30.058001 19.924000 31.337000
octanoate_u
A01C1 25.236000 39.186001 21.962000
A02H2 25.298000 39.356998 20.881001
A03H3 24.417999 39.791000 22.370001
choline_u
A01C1 34.403999 21.954000 33.858002
A02H2 34.383999 22.478001 32.901001
A03H3 34.741001 20.917000 33.866001
choline_u
A01C1 28.429001 25.601000 43.033001
A02H2 27.796000 26.306000 43.573002
A03H3 27.902000 24.646000 43.026001
choline_u
A01C1 31.197001 22.743000 18.752001
A02H2 31.846001 21.872999 18.643999
A03H3 30.993999 22.886000 19.813999
choline_u
A01C1 35.980000 18.576000 27.514999
A02H2 35.801998 17.726000 26.855000
A03H3 36.667999 19.271000 27.028999
octanoate_u
A01C1 27.613001 38.820000 27.906000
A02H2 27.337000 38.118000 28.701000
A03H3 27.330999 38.252998 27.011999
$end